Potential Characterization and Identification of Indigenous Rhizobacteria Species of Ultisol Soil to Support the Growth of Several Superior Upland Rice Varieties
DOI:
https://doi.org/10.25181/jppt.v21i3.2146Abstract
TG4 and SR2 were isolates of indigenous bacteria from cassava roots from Banyumas Regency, Central Java. Both are local isolates from marginal lands that can be developed as biofertilizers. This study aimed to determine the potential characteristics of bacterial isolates TG4 and SR2 in supporting the growth of superior upland rice and determining species identity based on the molecular analysis of 16S rRNA. Bacterial isolates TG4 and SR2 were determined for their potency of Plant Growth Promoting Rhizobacteria (PGPR) by fixing N2, dissolving phosphate, and producing Indole Acetic acid (IAA). Bioassays were carried out on TG4 and SR2 isolates by application of bacterial isolates (B0 = control, B1 = TG4, B2 = isolates SR2, B3 = isolates TG4 and SR2) on superior upland rice (V1 = INPAGO UNSOED 1, V2 = UNSOED PARIMAS, V3 = INPAGO 8) in sterile ultisol soil. The F test was used for bioassay data analysis, and if there was a significant difference, it was further tested with Duncan's Multiple Range Test (DMRT) with an error rate of 5%. The identity of bacterial species TG4 and SR2 was obtained by analyzing 16S rRNA sequences and genetic relationships through phylogenetic trees. The results showed that the isolates of TG4 were phosphate solubilizing bacteria and producers of IAA, while the isolates of SR2 were nitrogen fixing, phosphate solubilizing, and IAA producers. The application of bacterial isolates TG4 and SR2 significantly affected root length wet and dry weight of upland rice plants, with the highest value obtained from using a consortium of TG4 and SR2 bacteria. Bacterial isolates TG4 were identified as Bacillus albus, while SR2 as B. Paramycoides. Bacterial isolates TG4 and SR2 can be used as biofertilizers to support superior upland rice growth.Downloads
References
Ahadiyat, Y.R. & Ardiansyah., 2020. Aplikasi Pemupukan Pada System of Rice Intensification Terhadap Pertumbuhan dan Hasil Padi Saat Musim Kemarau. Jurnal Penelitian Pertanian Terapan, 20(3), pp.213–217.
Aksarah, A., Jumardin & Tibian, R., 2019. Response of Growth and Yield of Upland Rice Plants in Various Concentrations of Epifit Bacteria Isolate. Galung Tropika, 8(2), pp.74–81.
Aly, M. M., El-Sayed, H., Sayed, A. El, & Jastaniah, S. D., 2012. Synergistic Effect between Azotobacter vinelandii and Streptomyces sp. Isolated From Saline Soil on Seed Germination and Growth of Wheat Plant. Journal of American Science, 8(5), pp.667–676.
Asova, T. N. P., Jingga, A., Setiawati, M. R. & Simarmata, T., 2018. Uji hayati dan karakterisasi isolat rhizobakteri fosfat dengan indikator tanaman jagung. Jurnal Penelitian Saintek, 23(1), pp.43–51.
Astriani, M. & Murtiyaningsih, H., 2018. Pengukuran Indole- 3-Acetic Acid (IAA) pada Bacillus sp dengan Penambahan L-Tryptopan. Bioeduscience, 2(2), pp.116–121. https://doi.org/10.29405/j.bes/22116-1212233
Badan Litbang Pertanian. 2011. Inpago 8. https://www.litbang.pertanian.go.id/varietas/796/ [10 November 2021]
Dewi, T. K., SURYANGGONO, J. & AGUSTIYANI, D., 2016. Isolasi dan uji aktivitas bakteri penghasil hormon tumbuh IAA (Indole-3-Acetic Acid) dan Bakteri Perombak Protein dari Tanah Pertanian Tual, Maluku Tenggara. PROS SEM NAS MASY BIODIV INDON, 2, pp.271–276. https://doi.org/10.13057/psnmbi/m020226
Hadi, S. N., Widiyawati, I. & Dewi, P. S., 2018. Isolasi bakteri lokal lahan marginal dan karakterisasi berdasarkan laju pertumbuhan pada media mengandung buprofezin. Agrin, 22(2), pp.171–178.
Hall, T. A., 1999. Bioedit: a user-friendly biological sequence alignment editor and analysis program for windows 95/98/NT. Nucleic Acids Symposium Series, 41, pp.95–98.
Javaid, M. K., Ashiq, M. & Tahir, M., 2016. Potential of Biological Agents in Decontamination of Agricultural Soil. Scientifica, 2016. https://doi.org/10.1155/2016/1598325
Kannahi, M. & Senbagam, N., 2014. Studies on siderophore production by microbial isolates obtained from rhizosphere soil and its antibacterial activity. Journal of Chemical and Pharmaceutical Research, 6(4), pp.1142–1145.
Karpagam, T. & Nagalakshmi, P. K., 2014. Isolation and characterization of Phosphate Solubilizing Microbes from Agricultural soil. Int.J.Curr.Microbiol.App.Sci, 3(3), pp.601–614.
Kholida, F. T. & Zulaika, E., 2015. Potensi Azotobacter sebagai Penghasil Hormon IAA (Indole-3-Acetic Acid). Jurnal Sains dan Seni ITS, 4(2), pp.75–77.
Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K., 2018. MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35(6), pp.1547–1549. https://doi.org/10.1093/molbev/msy096
Larasati, E. D., Rukmi, M. I., Kusdiyantini, E. & Ginting, R. C. B., 2018. Isolasi dan Identifikasi Bakteri Pelarut Fosfat dari Tanah Gambut. Bioma : Berkala Ilmiah Biologi, 20(1), pp. 1–8. https://doi.org/10.14710/bioma.20.1.1-8
Lintang, C. W., Roviq, M. & Nihayati, E., 2018. Upaya Peningkatan Hasil Tanaman Kacang Hijau (Vigna radiata L) terhadap Pemberian Plant Growth Promoting Rhizobacter (PGPR) dan Mikoriza. Jurnal Protan, 6(6), pp.1134–1139. http://protan.studentjournal.ub.ac.id/index.php/protan/article/view/757
Mohite, B., 2013. Isolation and characterization of indole acetic acid (IAA) producing bacteria from rhizospheric soil and its effect on plant growth. Journal of Soil Science and Plant Nutrition, 13(3), pp.638–649. https://doi.org/10.4067/S0718-95162013005000051
Mutiara, Rianto, F. & Wasian., 2017. Karakterisasi Bakteri Penambat N Asal Bayam Liar (Amaranthus spinosus L.) Sebagai Pemacu Perkecambahan Benih Bayam Hijau (Amaranthus spp. L.). Agrovigor: Jurnal Agroekoteknologi, 10(2), pp.80–86. https://doi.org/10.21107/agrovigor.v10i2.2850
Ningsih, R. & Rahmawati, D., 2017. Aplikasi Paclobutrazol dan Pupuk Makro Anorganik Terhadap Hasil dan Mutu Benih Padi (Oryza sativa L.). Agriprima : Journal of Applied Agricultural Sciences, 1(1), pp.21–32. https://doi.org/10.25047/agriprima.v1i1.21
Nurmas, A., Rahman, A. & Khaeruni, A., 2014. Eksplorasi dan karakterisasi Azotobacter indigenous lokal di lahan marjinal. Jurnal Agroteknos, 4(2), pp.128–134.
Purwanto, Yuwariah, Y., Sumadi, S. & Simarmata, T., 2017. Nitrogenase activity and IAA production of indigenous diazotroph and its effect on rice seedling growth. Agrivita, 39(1), pp.31–37. https://doi.org/10.17503/agrivita.v39i1.653
Rahni, N. M., 2012. Efek Fitohormon PGPR Terhadap Pertumbuhan Tanaman Jagung (Zea mays). Jurnal Agribisnis Dan Pengembangan Wilayah, 3(16), pp.27–35.
Roni, N. G. K., Witariadi, N. M., Candraasih, N. N. K. & Siti, N. W., 2013. Pemanfaatan bakteri pelarut fosfat untuk meningkatkan produktivitas kudzu tropika (Pueraria phaseoloides benth.). Pastura, 3(1), pp.13–16. https://doi.org/10.24843/Pastura.2013.v03.i01.p04
Safitri, R. N., Shovitri, M. & Hidayat, H., 2018. Potensi Bakteri Koleksi sebagai Biofertilizer. Jurnal Sains Dan Seni ITS, 7(2), pp.53–56. https://doi.org/10.12962/j23373520.v7i2.37137
Saharan, B. S. & Nehra, V., 2011. Plant Growth Promoting Rhizobacteria: A Critical Review. Life Sciences and Medicine Research, 2011(4), pp.1–30.
Sharon, J. A., Hathwaik, L. T., Glenn, G. M., Imam, S. H. & Lee, C. C., 2016. Isolation of efficient phosphate solubilizing bacteria capable of enhancing tomato plant growth. Journal of Soil Science and Plant Nutrition, 16(2), pp.525–536. https://doi.org/10.4067/S0718-95162016005000043
Soumare, A., Diedhiou, A. G., Thuita, M. & Hafidi, M., 2020. Exploiting Biological Nitrogen Fixation : A Route. Plants, pp.1–22.
Stackebrandt, E. & Goebel, B. M., 1994. Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. International Journal of Systematic Bacteriology, 44(4), pp.846–849. https://doi.org/10.1099/00207713-44-4-846
Subardja, V., Muharam, M. & Nugraha, S., 2017. Karakteristik Pertumbuhan dan Hasil Jagung Manis Dilahan Marginal Dengan Dosis Pemupukan N yang Berbeda. Jurnal Agrotek Indonesia, 2(1), pp.7–12.
Tefa, A., 2017. Jurnal Pertanian Konservasi Lahan Kering International Standard of Serial Number 2477-7927 A. Jurnal Pertanian Konservasi Lahan Kering, 2(3), pp.48–50.
Uga, Y., Sugimoto, K., Ogawa, S., Rane, J., Ishitani, M., Hara, N., Kitomi, Y., Inukai, Y., Ono, K., Kanno, N., Inoue, H., Takehisa, H., Motoyama, R., Nagamura, Y., Wu, J., Matsumoto, T., Takai, T., Okuno, K. & Yano, M., 2013. Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions. Nature Genetics, 45(9), pp.1097–1102. https://doi.org/10.1038/ng.2725
Uttari, N. N. D., Nyana, I. D. N. & Astiningsih, A. A. M., 2016. Efektivitas Penggunaan Pupuk Hayati (Enterobacter Cloacae) Untuk Meningkatkan Hasil Dan Mutu Benih Padi Varietas Cigeulis. E-Jurnal Agroekoteknologi Tropika (Journal of Tropical Agroecotechnology), 5(1), pp.83–92.
Vishwakarma, D., Thakur, J. K. & Gupta, S., C. 2017. Study of Production of Indole Acetic Acid by Soil and Plant Bacterial Isolates on Different Media. International Journal of Chemistry Studies, 5(6), pp.639–641.
Wang, Y., Zhang, T., Wang, R. & Zhao, Y., 2017. Recent advances in auxin research in rice and their implications for crop improvement. Journal of Experimental Botany, 69(2), pp.255–263. https://doi.org/10.1093/jxb/erx228
Warda., 2011. Keragaan beberapa varietas unggul baru padi gogo di Kabupaten Bantaeng Sulawesi Selatan. Prosiding Seminar Nasional Serealia, pp.1–8.
Widiyawati, I., Junaedi, A., Widyastuti, R., Meranti, J. & Dramaga, K. I. P. B., 2014. Peran Bakteri Penambat Nitrogen untuk Mengurangi Dosis Pupuk Nitrogen Anorganik pada Padi Sawah. Jurnal Agronomi Indonesia (Indonesian Journal of Agronomy), 42(2), pp.96–102. https://doi.org/10.24831/jai.v42i2.8424
Downloads
Published
How to Cite
Issue
Section
License
Copyright (c) 2022 Jurnal Penelitian Pertanian Terapan
This work is licensed under a Creative Commons Attribution-ShareAlike 4.0 International License.
Authors who publish with this journal agree to the following terms:
- Authors retain copyright and grant the journal right of first publication with the work simultaneously licensed under a Creative Commons Attribution License that allows others to share the work with an acknowledgement of the work's authorship and initial publication in this journal.
- Authors are able to enter into separate, additional contractual arrangements for the non-exclusive distribution of the journal's published version of the work (e.g., post it to an institutional repository or publish it in a book), with an acknowledgement of its initial publication in this journal.
- Authors are permitted and encouraged to post their work online (e.g., in institutional repositories or on their website) prior to and during the submission process, as it can lead to productive exchanges, as well as earlier and greater citation of published work (See The Effect of Open Access).
Ciptaan disebarluaskan di bawah Lisensi Creative Commons Atribusi-BerbagiSerupa 4.0 Internasional.